Peer-reviewed Journal Articles and Short Papers

  1. David J. Foran , Peter Meer, Thomas V. Papathomas, and Ivan Marsic."Compression Guidelines for Diagnostic Telepathology".IEEE Transactions on Information Technology in Biomedicine. Vol. 1, pages 55-60, 1997.
  2. Dorin Comaniciu, Peter Meer, Attila Medl, David J. Foran. "Bimodal System for Interactive Indexing and Retrieval of Pathology Images". IEEE Proceedings on Computer Vision. Vol. 1, pages 76-81, 1998.
  3. Dorin Comaniciu, David J. Foran, and Peter Meer. "Shape-Based Image Indexing and Retrieval for Diagnostic Pathology". IEEE Proceedings on Pattern Recognition. Vol. 1, pages 902-905, 1998.
  4. Dorin Comaniciu, Peter Meer, David J. Foran. "Image Guided Decision Support System for Pathology". Machine Vision and Applications. Vol. 11:4, pages 213-224. 1999.
  5. Dorin Comaniciu, Wenjin Chen, Peter Meer, David J. Foran, "Multiuser Workspaces for Remote Microscopy in Telepathology", IEEE Proceedings on Computer-Based Medical Systems. Vol. 1, pages 150-156, 1999.
  6. David J. Foran, Dorin Comaniciu, Peter Meer, and Lauri A. Goodell. "Computer Assisted Discrimination Among Malignant Lymphomas and Leukemia Using Immunophentyping, Intelligent Image Repositories and Telemicroscopy". IEEE Trans. On Information Technology in Biomedicine, Vol. 4:4, pages 265-273. 2000.
  7. Wenjin Chen, David J. Foran, and Michael Reiss. "Unsupervised Imaging, Registration and Archiving of Tissue Microarrays". Proceedings of the American Medical Informatics Association. Vol. 1: 136-139, 2002.
  8. Wei Lin, Joseph Wilder, and David J. Foran. "A Network-Reactive Model for Telemicroscopy". Journal of Telemedicine and Telecare. Vol. 9, No. 2, pp. 78-83, 2003.
  9. Wenjin Chen, Michael Reiss, and David J. Foran. "Unsupervised Tissue Microarray Analysis for Cancer Research and Diagnostics". IEEE Transactions on Information Technology in Biomedicine. Vol. 8: No. 2, pages 89-96. 2004.
  10. Lin Yang, Peter Meer, David J. Foran. "Unsupervised Analysis of Imaged Pathology Specimens Based on Robust Estimation and Color Active Contour Models". IEEE Transactions on Information Technology in Biomedicine. Vol. 9: 3; 475-486. 2005.
  11. Wenjin Chen, Peter Meer, Bogdan Georgescu, Wei He, Lauri A. Goodell, David J. Foran."Image Mining for Investigative Pathology Using Optimized Feature Extraction and Data Fusion". Computer Methods and Programs in Biomedicine Vol 79, 59-72. 2005.
  12. Wenjin Chen and David J. Foran. Advances in Tissue Microarray Technology: Towards Improved Understanding and Diagnosis of Cancer. Analytica Chimica Acta. Vol. 5:1; 74-81. 2006.
  13. Lin Yang, Wenjin Chen, Oncel Tuzel, Peter Meer, Michael D. Feldman, Lauri A. Goodell, Adam Bagg, Wei He, David J. Foran. PathMiner: A System for Web-based Telemicroscopy, Intelligent Archiving and Decision Support. In preparation
  14. Lin Yang, Wenjin Chen, Michael D. Feldman, Viktors Berstis, and David J. Foran. Digital Microscopy & High-throughput Cancer Specimen Analysis on World Wide Grid. Cancer Informatics. In review.
  15. Oncel Tuzel, Lin Yang, Peter Meer, David J. Foran. Classification of Hematologic Malignancies Using Aggregated Classifiers and Support Vector Machines on Texton Signatures. Pattern Analysis and Applications. In Press.
  16. Lin Yang and David J. Foran. A Variable Framework for Segmentation of Partially Occluded Objects using Shape Priors and Semi-Parametric Density Approximation. IEEE International Conference on Image Processing (ICIP). In Press.
  17. Lin Yang, Peter Meer, David J. Foran. Pixel-Wise Multiple Class Segmentation Using Histogram Descriptors Over Mean-Shift Patches. IEEE International Conference on Computer Vision and Pattern Recongition (CVPR). In Press.
  18. Wenjin Chen, Cristina Schmidt, Manish Parashar, Michael Reiss, David J. Foran. Decentralized Data Sharing of Tissue Microarrays for Investigative Research in Oncology. Cancer Informatics. In press.
  19. Cristina Schmidt, Manish Parashar, Wenjin Chen, David J. Foran. "Engineering a Peer-to-Peer Collaboratory for Tissue Microaray Research". Accepted for publication.
  20. Lin Yang, Peter Meer, Lauri A. Goodell, Michael D. Feldman, and David J. Foran. High-Throughput Breast Cancer Analysis on the Grid. Proceedings on Medical  Image Computing and Computer-Assisted Intervention. In press.
  21. Bonnie H. Hall, Wenjin Chen, and David J. Foran. A Clinically Motivated 2-Fold Framework for Quantifying and Classifying of Immunohistochemically Stained Specimens. Proceedings on Medical Image Computing and Computer-Assisted Intervention. In press.

Abstracts

  1. Lin Yang, Gratian Salaru, Peter Meer, David J. Foran. Robust Estimation and Color GVF Snakes for Unsupervised Image Analysis in Pathology. Archives in Pathology & Laboratory Medicine. Vol 130: 890-903, 2006.
  2. Cristina Schmidt, Manish Parashar, Wenjin Chen, David J. Foran. Engineering a Peer-to-Peer Collaboratory for Tissue Microarray Research. Proceedings of Challenges of Large Applications in Distributed Environments Workshop (CLADE), Honolulu HI, June 2004.
  3. Lin Yang, Peter Meer, David J. Foran. A General Framework for Segmenting Imaged Pathology Specimens Using Level-set and Gaussian Hidden Markov Random Fields. Archives in Pathology & Laboratory Medicine. 2004.
  4. Wei He, Lauri A. Goodell, David J. Foran. An Image Funnel for Generating Selective Cell Archives. Archives in Pathology & Laboratory Medicine, 127:789-813, 2003.

Book Chapters

  1. Parametric and Geometric Deformable Models: An Application in Biomaterials and Medical Imaging. Invited Book Chapter entitled, "Deformable Models and Their Application in Segmentation of Imaged Pathology Specimens". Lin Yang and David J. Foran. Volume-II, Springer Publishers, Editors (Jasjit S. Suri and Aly Farag), ISBN: 0-387-31204-8,Release Date: May 2006.
  2. DNA Array Image Analysis: Nuts & Bolts. Invited Book Chapter entitled, "Tissue Microarray: Modern Imaging and Analytical Tools for Investigative Research & Discovery". Gerda Kamberova. Wenjin Chen, Michael Reiss and David J. Foran. DNA Press. In press.
  3. Image Analysis in Medical Microscopy and Pathology. Invited Book Chapter entitled, "Modern Methods for Automated Image Interpretation". Wenjin Chen and David J. Foran Research Signpost. Managing Editor. Dr. S.G. Pandalai In press.

Patents

  1. Systems for Analyzing Microtissue Arrays U.S. Patent # 7,079,673 issued, 07/06.

Videos (RealPlayer® required for viewing. Please play with audio turned on. )

  1. Image-Guided Decision Support System
  2. Distributed Telemicroscopy
  3. Unsupervised Cell Analysis