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Image Guided Decision Support System

Distributed Telemicroscopy

Unsupervised Cell Analysis
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Publications

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    2009

  1. Hyunjoo Kim, Manish Parashar, David J. Foran, Lin Yang. Investigating the use of Cloudbursts for High Performance Registration of Medical Images. IEEE/ACM International Conference on Grid Computing. In Press.
  2. Lin Yang, Leiguang Gong, Hong Zhang, John L. Nosher and David J. Foran. A Multicore Parallel Image Registration Method. IEEE Proceedings of the Engineering in Medicine and Biology Society. In Press.
  3. Lin Yang, Leiguang Gong, Hong Zhang, John L. Nosher and David J. Foran. Landmark-Based Co-Registration of Consecutive Imaging Studies using High Performance Parallel Computing. European Conference on Parallel Computing. In Press.
  4. Hong Zhang, Lin Yang, David J. Foran, John L. Nosher and Peter J. Yim. 3-D Segmentation of the Liver using Free-Form Deformation based on Boosting and Deformation Gradients. International Symposium on Biomedical Imaging. In Press.
  5. William Cukierski, Xin Qi and David J. Foran. Moving Beyond Color: The Case for Multispectral Imaging in Bright-Field Pathology. International Symposium on Biomedical Imaging. In Press.
  6. David J. Foran, Lin Yang, Oncel Tuzel, Wenjin Chen, Jun Hu, Tahsin Kurc, Renato Ferreira, Joel Saltz. A caGrid enabled, Learning-Based Segmentation Method for Histopathology Specimens. International Symposium on Biomedical Imaging. In Press.
  7. Lin Yang, Wenjin Chen, Peter Meer, Michael D. Feldman, Lauri A. Goodell, Adam Bagg, Wei He, David J. Foran. PathMiner: A Web Based Tool for Computer Assisted Diagnostics in Pathology. IEEE Transactions on Information Technology in Biomedicine. [Epub ahead of print] PMID: 19171530, 2009.
  8. Lin Yang, Wenjin Chen, Michael D. Feldman, Viktors Berstis, and David J. Foran. Virtual Microscopy and Grid-enabled Decision Support for Large-Scale Analysis of Image Pathology Specimens. IEEE Transactions on Information Technology in Biomedicine. In press.
  9. Gabriela Niculescu, John L. Nosher, David J. Foran. A Deformable Model for Tracking Tumors across Consecutive Imaging Studies. International Journal of Computer Assisted Radiology and Surgery. In Press.

    2008

  1. Lin Yang, Bogdan Georgescu, Yefeng Zheng, David J. Foran, Dorin Comaniciu. A Fast and Accurate Tracking Algorithm of Left Ventricles in 3-D Echocardiography. IEEE Proceedings of the International Symposium on Biomedical Imaging. 221-224. 2008.
  2. William J. Cukierski and David J. Foran. Using Betweenness Centrality to Identify Manifold Shortcuts. Proceedings of IEEE International Conference on Data Mining, Analysis of Dynamic Networks. ICDMW, 949-958.
  3. Lin Yang, Bogdan Georgescu, Yefeng Zheng, Peter Meer, David J. Foran and Dorin Comaniciu. An Automatic, Robust and Fast-Tracking of Heart Motion in 3-D Ultrasound and CT Images. IEEE Transaction on Medical Imaging. In submission.
  4. Gabriela Niculescu, John L. Nosher, David J. Foran. 3-D Morphometry and Non-Rigid Registration for Quantitative Analysis and Clinical Assessment in Radiology. . In Review.
  5. Lin Yang, Peter Meer, David J. Foran. Touching Cell Segmentation in Hematologic Specimens using Concave Vertex Graphs. Proc. International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). New York, US, September 2008.
  6. Bonnie H. Hall, Monica Ianosi-Irimie, Parisa Javidian, Wenjin Chen, Shridar Ganesan, David J. Foran. Computer Assisted Assessment of the Human Epidermal Growth Factor Receptor 2 Immunohistochemical Assay in Histologic Sections Using a Membrane Isolation Algorithm and Quantitative Analysis of Positive Controls. BMC Medical Imaging. Vol8:11, 2008.
  7. Robert S. DiPaola, Dmitri Dvorzhinski, Anu Thalisila, Venkata Garikapaty, Michael May, K. Bray, Brian Beaudoin, C. Karp, Wenjin Chen, David J. Foran, Eileen White. Therapeutic Starvation and Autophagy in Prostate Cancer: A New Paradigm for Targeting Metabolism in Cancer Therapy. Prostate. Sept. 2, 2008.
  8. Lin Yang, Wenjin Chen, Peter Meer, Michael D. Feldman, Lauri A. Goodell, Adam Bagg, Wei He, David J. Foran. PathMiner: A Web Based Tool for Computer Assisted Diagnostics in Pathology. IEEE Transactions on Information Trachnology in Biomedicine. Accepted.
  9. Wenjin Chen, Gratian Salaru, David J. Foran. Computer Assisted Microscopy (CAM): Robotic Microscopy with Applications in Unsupervised Specimen Analysis and Telemedicine. . In review.
  10. Lin Yang, Bogdan Georgescu, Yefeng Zheng, David J. Foran, Dorin Comaniciu. A Fast and Accurate Tracking Algorithm of Left Ventricles in 3-D Echocardiography. IEEE International Symposium on Biomedical Imaging. In press.
  11. David J. Foran and John L. Nosher. Multivariate Tracking of Hepatic Neoplasms for Improved Therapy Planning. . In review.

    2007

  1. Gabriela Niculescu, John L. Nosher, David J. Foran. Non-rigid Registration of the Liver in Consecutive CT Studies for Assessment of Tumor Response to Radiofrequency Ablation. IEEE Proceedings of the Engineering in Medicine and Biology Society. 856-9, 2007.
  2. Bonnie H. Hall, Wenjin Chen, and David J. Foran. A Clinically Motivated 2-Fold Framework for Quantifying and Classifying of Immunohistochemically Stained Specimens.Proceedings on Medical Image Computing and Computer-Assisted Intervention. Proceedings on Medical Image Computing and Computer-Assisted Intervention (MICCAI). Vol. 10:2; 287-94, 2007.
  3. Lin Yang, Peter Meer, Lauri A. Goodell, Michael D. Feldman, and David J. Foran. High-Throughput Breast Cancer Analysis on the Grid. Proceedings on Medical Image Computing and Computer-Assisted Intervention (MICCAI). Vol. 10:2;617-25, 2007.
  4. Lin Yang, Wenjin Chen, Michael D. Feldman, Viktors Berstis, and David J. Foran. Virtual Microscopy and Grid-enabled Decision Support for Large-Scale Analysis of Image Pathology Specimens. . In review.
  5. Lin Yang and David J. Foran. A Variational Framework for Partially Occluded Image Segmentation Using Coarse to Fine Shape Alignment and Semi-parametric Density Approximation. IEEE Proceedings on Image Processing. In press.
  6. Lin Yang, Peter Meer, David J. Foran. Pixel-Wise Multiple Class Segmentation Using Histogram Descriptors Over Mean-Shift Patches. IEEE Proceedings on Computer Vision and Pattern Recognition. In press.
  7. Oncel Tuzel, Lin Yang, Peter Meer, David J. Foran. Classification of Hematologic Malignancies Using Texton Signatures. Pattern Analysis and Applications. 10, 277-290, 2007.

    2006

  1. Wenjin Chen, Cristina Schmidt, Manish Parashar, Michael Reiss, David J. Foran. Decentralized Data Sharing of Tissue Microarrays for Investigative Research in Oncology. Cancer Informatics. Vol. 2: 373–388, 2006.
  2. Wenjin Chen and David J. Foran. Advances in Tissue Microarray Technology: Towards Improved Understanding and Diagnosis of Cancer. Analytica Chimica Acta. Vol. 5:1; 74-81. 2006. (PDF)

    2005

  1. Lin Yang, Peter Meer, David J. Foran. Unsupervised Analysis of Imaged Pathology Specimens Based on Robust Estimation and Color Active Contour Models.. IEEE Trans. on Information Technology in Biomedicine. Vol. 9, pages 475-486. 2005. (PDF)
  2. Wenjin Chen, Peter Meer, Bogdan Georgescu, Wei He, Lauri A. Goodell, David J. Foran. Image Mining for Investigative Pathology Using Optimized Feature Extraction and Data Fusion. Computer Methods and Programs in Biomedicine. Volume 79, Issue 1, Pages 59-72, 2005. (PDF)

    Pre-2005

  1. Wenjin Chen, Michael Reiss, and David J. Foran. Unsupervised Tissue Microarray Analysis for Cancer Research and Diagnostics. IEEE Transactions on Information Technology in Biomedicine. Vol. 8: No. 2, pages 89-96. 2004. (PDF)
  2. Wei Lin, Joseph Wilder, and David J. Foran. A Network-Reactive Model for Telemicroscopy. Journal of Telemedicine and Telecare. Vol. 9, No. 2, pp. 78-83, 2003. (PDF)
  3. Wenjin Chen, David J. Foran, and Michael Reiss. Unsupervised Imaging, Registration and Archiving of Tissue Microarrays. Proceedings of the American Medical Informatics Association. Vol. 1: 136-139, 2002. (PDF)
  4. Gabriela Niculescu, Louay Toni, David J. Foran, John L. Nosher, Kevin J. DeMarco. Dynamic Imaging Database for 3D Morphologic Analysis and Clinical Assesssment in Diagnostic Radiology. AMIA. 2002. (PDF)
  5. David J. Foran, Dorin Comaniciu, Peter Meer, and Lauri A. Goodell. Computer Assisted Discrimination Among Malignant Lymphomas and Leukemia Using Immunophentyping, Intelligent Image Repositories and Telemicroscopy. IEEE Trans. On Information Technology in Biomedicine. Vol. 4:4, pages 265-273. 2000. (PDF)
  6. Dorin Comaniciu, Peter Meer, David J. Foran. Image Guided Decision Support System for Pathology. Machine Vision and Applications. Vol. 11:4, pages 213-224. 1999. (PDF)
  7. Dorin Comaniciu, Wenjin Chen, Peter Meer, David J. Foran. Multiuser Workspaces for Remote Microscopy in Telepathology. IEEE Proceedings on Computer-Based Medical Systems. Vol. 1, pages 150-156, 1999. (PDF)
  8. Dorin Comaniciu, David J. Foran, and Peter Meer. Shape-Based Image Indexing and Retrieval for Diagnostic Pathology. IEEE Proceedings on Pattern Recognition. Vol. 1, pages 902-905, 1998. (PDF)
  9. Dorin Comaniciu, Peter Meer, Attila Medl, David J. Foran. Bimodal System for Interactive Indexing and Retrieval of Pathology Images. IEEE Proceedings on Computer Vision. Vol. 1, pages 76-81, 1998. (PDF)
  10. David J. Foran , Peter Meer, Thomas V. Papathomas, and Ivan Marsic. Compression Guidelines for Diagnostic Telepathology. IEEE Transactions on Information Technology in Biomedicine. Vol. 1, pages 55-60, 1997. (PDF)